About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155237937_155243904_R

Intron Information:

Intron Rank:
137079
Intron Class:
major
Intron Phase:
Intron Coordinates:
155237937 - 155243904
Intron Length:
5968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTAACCATGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
62.2
0.28
1.1
61.8
38.9
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021247
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028522
155237357 - 155259693
22337