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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155247903_155250464_F

Intron Information:

Intron Rank:
147366
Intron Class:
major
Intron Phase:
Intron Coordinates:
155247903 - 155250464
Intron Length:
2562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATCATTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
GTATCATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
72.5
0.51
0.9
70.7
39.5
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
56.6
0.28
1.9
75.14
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029363
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041453
155245100 - 155250701
5602