About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155247903_155259567_F

Intron Information:

Intron Rank:
147369
Intron Class:
major
Intron Phase:
Intron Coordinates:
155247903 - 155259567
Intron Length:
11665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
CAGGCTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
40.5
-0.6
2.1
51.62
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029363
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044751
155243678 - 155261419
17742