Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155318021_155319899_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

155318021 - 155319899

Intron Length:

1879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGAG

5'SS Class:

strong_major

3'SS Sequence:

TGGTCTCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTTTACAACC

Flanking Amino Acid:

LLAAVLCMDSGSSLKCYSCK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

75.1

35.1

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

79.6

0.67

0.9

73.4

Minor 5ss

29.8

-2.3

3.3

37.5

47.2

Minor BPS

57.6

0.22

1.8

75.1

35.2

Associated Gene:

Gene:

PSCA

Ensembl Gene ID:

ENSAPLG00000029276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040625

155317969 - 155323788

5820