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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155345682_155363341_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155345682 - 155363341
Intron Length:
17660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACAGATA
5'SS Class:
major
3'SS Sequence:
CTTTGTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
GTGCCTATAACT
Flanking Amino Acid:
CCYADLCNSDGPLVLPAISF
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
64.9
40.6
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
78
0.63
0.9
73.4
35.9
Minor 5ss
34.3
-1.8
3.5
45
45
Minor BPS
59.7
0.38
1.6
75.35
41

Associated Gene:

Gene:
LYPD2
Ensembl Gene ID:
ENSAPLG00000029723
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010550
155345515 - 155369783
24269