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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155363471_155364337_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155363471 - 155364337
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCATTCCTAACT
Flanking Amino Acid:
CKTTMYSLEEVYPFVGVSTV
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
81.5
0.71
0.9
76.2
37.8
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
59.5
0.38
1.7
72.85
44

Associated Gene:

Gene:
LYPD2
Ensembl Gene ID:
ENSAPLG00000029723
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045572
155362648 - 155369887
7240
ENSAPLT00000023309
155362648 - 155364739
2092
ENSAPLT00000010550
155345515 - 155369783
24269