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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155399885_155400665_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155399885 - 155400665
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCCCCCTTCATT
Flanking Amino Acid:
CVTIRDNIGTKPNKPKYVIS
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
66.3
0.37
0.8
65.8
28.6
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
59
0.36
1.8
72.74
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010588
155399597 - 155404454
4858