About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155400786_155404402_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155400786 - 155404402
Intron Length:
3617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
GTCGTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
LLAAVLCVEQAYPFMCYVCQ
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.7
0.51
0.9
62.3
39.8
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010588
155399597 - 155404454
4858