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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155409833_155410473_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155409833 - 155410473
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TCTCTCCTACTT
Flanking Amino Acid:
CLTTYSTTGLGNDRKQHITK
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
76.5
39.2
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
80.7
0.69
0.8
77.9
29.2
Minor 5ss
36.8
-1.5
3.3
50
46.2
Minor BPS
48.3
-0
1.9
69.25
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018242
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048115
155409624 - 155413878
4255