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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155417271_155417683_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155417271 - 155417683
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGAT
5'SS Class:
major
3'SS Sequence:
TTTATTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTCCTTTTATT
Flanking Amino Acid:
VASLVCVIRAASGILPWLPF
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.2
34.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.7
0.83
0.7
85.7
28.9
Minor 5ss
36.8
-1.5
3.1
49.5
46.8
Minor BPS
63.3
0.5
1.6
79.56
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010200
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010614
155416994 - 155421233
4240