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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155418612_155421181_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155418612 - 155421181
Intron Length:
2570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TAACGCTTATCA
Flanking Amino Acid:
LLAAVLCAERASSLFCYTCD
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
87.5
0.84
0.8
80.2
37.3
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
49.4
-0
2
63.22
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010200
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010614
155416994 - 155421233
4240