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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155432980_155433127_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
155432980 - 155433127
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTAGCTCG
5'SS Class:
major
3'SS Sequence:
AGAGTAGATAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGTAGAT
U12 Branch Point Sequence:
TGGCCACCAAGC
Flanking Amino Acid:
LCNLSACPGPSIMVTTSCPV
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
59.6
46.7
Major BPS
55.2
0.13
1.2
52.5
43.3
Major PPT
46.7
-0.1
1.2
38.4
42.5
Minor 5ss
30.2
-2.3
3.8
39.7
45.8
Minor BPS
38
-0.9
2.1
47.3
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030824
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045047
155432832 - 155435465
2634