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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155441930_155442884_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
155441930 - 155442884
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATACAGTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
ATAGCAATAACA
Flanking Amino Acid:
RDKFWRLSFQRFLQH*
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
71.4
0.53
1
67
39.8
Major PPT
45.9
-0.2
1.8
52.2
46.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
49.3
-0
2
65.3
40.3

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028992
155441914 - 155461127
19214