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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155441934_155448731_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155441934 - 155448731
Intron Length:
6798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
ATAGCAATAACA
Flanking Amino Acid:
NYLDPRISIACEVFTALIQA
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
71.4
0.53
1
67
39.8
Major PPT
78.8
0.65
1
72.9
41.4
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
49.3
-0
2
65.3
40.3

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023225
155441774 - 155461127
19354