Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155448370_155448731_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

155448370 - 155448731

Intron Length:

362

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GTGCTCTCCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGGGAT

U12 Branch Point Sequence:

TGTCCCCTCAGT

Flanking Amino Acid:

NYLDPRISIAWCKKFGVPIE

Intron Amino Acid Position:

560

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

47.6

-0.1

1.5

46.5

Major PPT

67.6

0.4

0.9

62.2

34.7

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

46.5

-0.1

2.3

71.09

45.2

Associated Gene:

Gene:

TOP1MT

Ensembl Gene ID:

ENSAPLG00000011149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011608

155447928 - 155461127

13200