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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155449831_155450570_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155449831 - 155450570
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
TTTGCCTTCACA
Flanking Amino Acid:
EKSMQNLQSKIDAKKQQLEE
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
81.9
0.72
0.8
76.1
32.5
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
70.9
0.65
1.8
83.03
38.2

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028992
155441914 - 155461127
19214
ENSAPLT00000023225
155441774 - 155461127
19354
ENSAPLT00000011608
155447928 - 155461127
13200