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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155450699_155451156_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155450699 - 155451156
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
ACTTTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGCACTTTATTT
Flanking Amino Acid:
LQEQLKALTNPEDSVAGKLL
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.3
75.2
37.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
82.7
0.74
0.8
73.9
40.1
Minor 5ss
42.6
-0.8
3
62.8
42
Minor BPS
54.8
0.23
1.6
68.94
42.6

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028992
155441914 - 155461127
19214
ENSAPLT00000023225
155441774 - 155461127
19354
ENSAPLT00000011608
155447928 - 155461127
13200