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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155451272_155452164_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155451272 - 155452164
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
CTCCTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTTTCTTTACTT
Flanking Amino Acid:
PGDDLFDRLTTVILNKHLQN
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
72.1
40.1
Major BPS
74
0.6
1
65.6
41.1
Major PPT
81.2
0.7
0.7
72.9
32
Minor 5ss
44.8
-0.6
2.9
68.2
42.5
Minor BPS
75.9
0.89
1.5
91.31
32.6

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011608
155447928 - 155461127
13200
ENSAPLT00000028992
155441914 - 155461127
19214
ENSAPLT00000023225
155441774 - 155461127
19354