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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155452234_155453142_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155452234 - 155453142
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGTG
5'SS Class:
major
3'SS Sequence:
TTCTCCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TTGTCCCTGACC
Flanking Amino Acid:
YYNKVSVEKPVFKNLQLFMK
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.5
42.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
82.8
0.74
0.6
81.6
23.4
Minor 5ss
35
-1.7
3.5
47.2
48.2
Minor BPS
68.5
0.57
1.7
78.82
36.8

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028992
155441914 - 155461127
19214
ENSAPLT00000023225
155441774 - 155461127
19354
ENSAPLT00000011608
155447928 - 155461127
13200