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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155455551_155456063_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155455551 - 155456063
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAT
U12 Branch Point Sequence:
TGTGGGGTGATG
Flanking Amino Acid:
RKALPKEEKQKLKEAADKIQ
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
81.2
32.3
Major BPS
49.3
-0
1.5
42.8
49.4
Major PPT
73.3
0.52
1
69.3
41.7
Minor 5ss
29.5
-2.4
3.1
40.4
45.5
Minor BPS
33.6
-1.4
2.7
42.07
43.8

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028992
155441914 - 155461127
19214
ENSAPLT00000023225
155441774 - 155461127
19354
ENSAPLT00000011608
155447928 - 155461127
13200