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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155456827_155458783_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155456827 - 155458783
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GTCCCCAAAACT
Flanking Amino Acid:
LPDDVQFYYDGKPLKLSLAT
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.3
41.7
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
87.4
0.84
0.7
80.6
31.4
Minor 5ss
38.3
-1.3
3
45.9
43.3
Minor BPS
49.8
0.07
2
71.33
44.9

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028992
155441914 - 155461127
19214
ENSAPLT00000023225
155441774 - 155461127
19354
ENSAPLT00000011608
155447928 - 155461127
13200