About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155458900_155460038_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155458900 - 155460038
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTGCCTCTCATG
Flanking Amino Acid:
GLRAGSGGCSRWEEEKTADG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.6
0.6
0.9
68.5
42.1
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
42.1
-0.7
2
45.85
41.1

Associated Gene:

Gene:
TOP1MT
Ensembl Gene ID:
ENSAPLG00000011149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028992
155441914 - 155461127
19214
ENSAPLT00000023225
155441774 - 155461127
19354
ENSAPLT00000011608
155447928 - 155461127
13200