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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155462036_155462184_R

Intron Information:

Intron Rank:
137987
Intron Class:
major
Intron Phase:
Intron Coordinates:
155462036 - 155462184
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGAAAC
5'SS Class:
major
3'SS Sequence:
TTGCTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATATCAACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
66
40.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.6
0.73
0.8
76.8
32
Minor 5ss
31.9
-2.1
3.2
34.6
41.6
Minor BPS
47.6
-0.1
2
70.43
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021764
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023947
155461148 - 155467282
6135