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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155466432_155466600_R

Intron Information:

Intron Rank:
137990
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
155466432 - 155466600
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCGGGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
54
0.09
1.3
56.5
43.7
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021764
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043306
155462072 - 155467947
5876
ENSAPLT00000023947
155461148 - 155467282
6135