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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155481925_155483976_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155481925 - 155483976
Intron Length:
2052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CAGCCACCAAAG
Flanking Amino Acid:
NSCMDVYQNESESISVPMIP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
85.4
0.8
0.8
77.2
37.1
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
35.5
-1.2
1.9
34.13
38.8

Associated Gene:

Gene:
RHPN1
Ensembl Gene ID:
ENSAPLG00000011125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011593
155477971 - 155494528
16558