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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155484053_155484452_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155484053 - 155484452
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTCAAGATT
Flanking Amino Acid:
KELDLLLPLEDFISEHYGEE
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.8
0.65
0.8
70.6
35.2
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
48.5
-0
1.9
72
39.3

Associated Gene:

Gene:
RHPN1
Ensembl Gene ID:
ENSAPLG00000011125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011593
155477971 - 155494528
16558