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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155490317_155490476_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155490317 - 155490476
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCCTTACCGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTCTCCTTACCG
Flanking Amino Acid:
FETGDAPDILPKTHQKPEIK
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
82.1
37.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
65.1
0.34
0.9
59
37.3
Minor 5ss
43.5
-0.7
2.9
65.1
39.1
Minor BPS
64.5
0.32
1.8
66.7
47.1

Associated Gene:

Gene:
RHPN1
Ensembl Gene ID:
ENSAPLG00000011125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011593
155477971 - 155494528
16558