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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155490554_155491770_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155490554 - 155491770
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTACA
5'SS Class:
major
3'SS Sequence:
GCTTTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAC
U12 Branch Point Sequence:
CTTTCCCTGTTT
Flanking Amino Acid:
VKVTDLFHRLGPLSVFSAKN
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.5
37
Major BPS
52.8
0.07
1.4
66.7
39.9
Major PPT
71.4
0.48
0.9
61.9
40
Minor 5ss
35.1
-1.7
2.8
40.3
40.4
Minor BPS
42.7
-0.4
3.6
75.48
41.9

Associated Gene:

Gene:
RHPN1
Ensembl Gene ID:
ENSAPLG00000011125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011593
155477971 - 155494528
16558