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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155491918_155492850_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155491918 - 155492850
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
AGVIPGGCAAEAGLKEGDYI
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
47.7
-0.1
1
51
32
Major PPT
83.8
0.76
0.7
77.9
23.9
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
RHPN1
Ensembl Gene ID:
ENSAPLG00000011125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011593
155477971 - 155494528
16558