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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155514829_155516952_R

Intron Information:

Intron Rank:
138193
Intron Class:
major
Intron Phase:
Intron Coordinates:
155514829 - 155516952
Intron Length:
2124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGTGGCT
5'SS Class:
major
3'SS Sequence:
CCCTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GGGCTCTGATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
59.4
39.5
Major BPS
79
0.72
1
69
38.9
Major PPT
80.9
0.7
0.7
72.6
32.2
Minor 5ss
25.1
-2.9
3.6
38.5
46.7
Minor BPS
45.3
-0.3
1.7
50.18
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021093
155514565 - 155523284
8720