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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155517056_155523024_R

Intron Information:

Intron Rank:
138194
Intron Class:
major
Intron Phase:
Intron Coordinates:
155517056 - 155523024
Intron Length:
5969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCACTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
CTTCTCTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
77.9
0.63
0.8
68.5
36.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
49.7
0.06
2
73.07
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021093
155514565 - 155523284
8720