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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155540535_155544531_R

Intron Information:

Intron Rank:
128897
Intron Class:
major
Intron Phase:
Intron Coordinates:
155540535 - 155544531
Intron Length:
3997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTCTCCCCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
75.6
29.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
78.7
0.65
0.7
72.8
25.5
Minor 5ss
34.3
-1.8
3.2
44.1
44.7
Minor BPS
48
-0.1
2.3
68.3
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016487
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024512
155539931 - 155546200
6270