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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1556307_1558964_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1556307 - 1558964
Intron Length:
2658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTTGTTACAG
Flanking Amino Acid:
PSYASWFDYNCIHVIERRAL
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
86
0.81
0.9
80.4
36.6
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
47.5
-0.3
2.4
63.72
44.3

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025065
1510299 - 1709755
199457
ENSAPLT00000017626
1510299 - 1709755
199457
ENSAPLT00000045670
1510299 - 1709755
199457
ENSAPLT00000017188
1510299 - 1709755
199457
ENSAPLT00000038184
1510299 - 1709755
199457
ENSAPLT00000035479
1510299 - 1709755
199457