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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155667819_155670265_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155667819 - 155670265
Intron Length:
2447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTTAGAACA
5'SS Class:
major
3'SS Sequence:
ACTTGTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
GCTCCCTCAGCC
Flanking Amino Acid:
VEDLQPFKDLQPLTSFVALL
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.24
1.2
60.5
38.1
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
79
0.65
0.9
69.8
41
Minor 5ss
32.3
-2
2.7
40.7
38.5
Minor BPS
49.8
-0
1.8
61.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001712
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001705
155667328 - 155670560
3233