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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155671487_155674854_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155671487 - 155674854
Intron Length:
3368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CTTCCCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACACTATTAATC
Flanking Amino Acid:
YEIKRRLGKGAYGIVWKAID
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.3
0.53
0.7
65.8
30.2
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
49.8
-0
1.5
55.93
36.1

Associated Gene:

Gene:
MAPK15
Ensembl Gene ID:
ENSAPLG00000010530
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010957
155671418 - 155695978
24561