About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155702215_155702259_R


Intron Information:

Intron Rank:
4

Intron Class:
major-like

Intron Phase:
1

Intron Coordinates:
155702215 - 155702259

Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
AAA|GCCTGGAAC

5'SS Class:
major

3'SS Sequence:
GATGAGGACCAAG|A

3'SS Class:
degenerate_major

U2 Branch Point Sequence:
TTCCTAC

U12 Branch Point Sequence:
TGTTCCTACAAG

Flanking Amino Acid:
ICQTSPTQKQNQDKNTQENR

Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
62.6
0.3
1.2
61.3
40.7

Major BPS
58.9
0.22
1.3
58.4
40

Major PPT
44.7
-0.3
1.1
30.3
40.4

Minor 5ss
25.4
-2.8
3.9
34.1
35.6

Minor BPS
48
-0.3
2.3
61.3
46.1

Associated Gene:

Gene:
FAM83H

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

155700482 - 155707618
7137