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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155703144_155705044_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155703144 - 155705044
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTATTTTTACTT
Flanking Amino Acid:
DCMVVLSGNYSFMWSFEKIH
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
58.4
0.34
1.6
72.55
39.1

Associated Gene:

Gene:
FAM83H
Ensembl Gene ID:
ENSAPLG00000010481
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010907
155700482 - 155707618
7137