About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155705683_155707171_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
155705683 - 155707171

Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGAGACAT

5'SS Class:
strong_major

3'SS Sequence:
ATTCTTTTCCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTCTGAA

U12 Branch Point Sequence:
CTTTCTTGCATT

Flanking Amino Acid:
ARRMIRAAQQVVAIVMDIFT

Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
86.8
0.87
0.8
76.8
33.7

Major BPS
69.8
0.49
1
61
37.5

Major PPT
80
0.67
0.8
73.5
36.3

Minor 5ss
28.2
-2.5
3.1
38.3
46.6

Minor BPS
54.1
0.21
1.9
76.06
41.4

Associated Gene:

Gene:
FAM83H

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

155700482 - 155707618
7137