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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155764017_155769408_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155764017 - 155769408
Intron Length:
5392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGACAG
5'SS Class:
major
3'SS Sequence:
CTTTCTGAGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTTTCTGAGAC
Flanking Amino Acid:
AEKRAMWRAARMKSLEQDAL
Intron Amino Acid Position:
1580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
59
41.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
68.1
0.41
1.1
64.8
40.5
Minor 5ss
26.3
-2.7
2.9
31.2
42.3
Minor BPS
49.8
-0
1.8
64.17
41.2

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000026053
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000042571
155754284 - 155845296
91013