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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155775478_155777227_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155775478 - 155777227
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAGT
5'SS Class:
strong_major
3'SS Sequence:
GCATCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTCAC
U12 Branch Point Sequence:
ACTCTGTGGACA
Flanking Amino Acid:
PLSHPLLETQVPMPSGLHSP
Intron Amino Acid Position:
1378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.8
38.5
Major BPS
59.8
0.24
1.3
63.1
44.5
Major PPT
68.4
0.41
0.9
61.2
34.9
Minor 5ss
43
-0.8
2.7
60.7
43.6
Minor BPS
43.5
-0.5
2.1
54.11
38.3

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026053
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000036035
155754284 - 155845296
91013