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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155777336_155779622_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155777336 - 155779622
Intron Length:
2287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTCCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTATAATT
Flanking Amino Acid:
FIASQDDSKSPKPPSPPSPD
Intron Amino Acid Position:
1342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.7
78.7
30.2
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
63.1
0.49
1.6
79.74
37

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010687
155754284 - 155845296
91013