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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155778785_155779622_R

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
155778785 - 155779622
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTGACACAAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTCCCCTACTA
Flanking Amino Acid:
FIASQDDSKSTKPGVIQPLS
Intron Amino Acid Position:
1258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
58.8
0.2
1.1
53.3
40.7
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
55.4
0.16
2
73.63
38.2

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000026053
155754284 - 155845296
91013