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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155779665_155783934_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155779665 - 155783934
Intron Length:
4270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TACACCTTTATT
Flanking Amino Acid:
ETPYSPSNQQASINFIASQD
Intron Amino Acid Position:
1328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
60.3
0.4
1.7
73.67
43.4

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000026053
155754284 - 155845296
91013