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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155790943_155791682_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155790943 - 155791682
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTGTTTTTGCTC
Flanking Amino Acid:
TQQLEEEAAENITSEPLRLD
Intron Amino Acid Position:
1277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
75
0.56
0.8
65.5
36.1
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
42.8
-0.5
3.4
63.72
37.2

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877