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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155794831_155795081_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155794831 - 155795081
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GTGGCTCTAATT
Flanking Amino Acid:
SPEELEILQKEMEMVREATQ
Intron Amino Acid Position:
1238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
70.1
0.45
0.9
62.3
39.8
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
51.8
0.13
1.8
68.85
42.7

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000026053
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877