About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155809712_155810199_R


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
155809712 - 155810199

Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTTAGTAAT

5'SS Class:
major

3'SS Sequence:
GATTGTCTTTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTGAT

U12 Branch Point Sequence:
CTGCTCTGACCT

Flanking Amino Acid:
GSTPYRAGDTGIFISRIAEG

Intron Amino Acid Position:
884

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.2
0.64
1.2
79.5
35.6

Major BPS
91.3
1.03
0.7
79.6
35.6

Major PPT
78.1
0.63
0.9
73.8
41.4

Minor 5ss
34.2
-1.8
2.7
45.2
42.4

Minor BPS
48.5
-0
1.8
65.52
45

Associated Gene:

Gene:
SCRIB

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

155754284 - 155845296
91013

155754284 - 155843160
88877

155754284 - 155845296
91013

155754284 - 155845296
91013

155754284 - 155843160
88877

155754284 - 155845296
91013