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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155812818_155827076_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155812818 - 155827076
Intron Length:
14259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTACC
5'SS Class:
major
3'SS Sequence:
ATTCTGCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGACTTGTAACC
Flanking Amino Acid:
IEPARIEEEELTLTIVRQTG
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.3
71.5
38.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.5
0.66
0.9
70
40.8
Minor 5ss
38.5
-1.3
2.4
47
41.3
Minor BPS
48.6
-0.1
2
60.83
38.3

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000026053
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877