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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155829644_155830120_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155829644 - 155830120
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
AGGCTCACAGCC
Flanking Amino Acid:
EEDVEVEYNEPTVHFAEDTL
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
80.8
0.69
0.9
74.4
35
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
39.3
-0.8
1.8
44.39
36.6

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000026053
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000042571
155754284 - 155845296
91013