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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155833125_155834193_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155833125 - 155834193
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GTTTCACCAACA
Flanking Amino Acid:
ELHVLDVAGNRLQNLPFALT
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
49.6
-0
2.1
71.19
40

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000026053
155754284 - 155845296
91013
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877