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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15583339_15606403_R

Intron Information:

Intron Rank:
135944
Intron Class:
major
Intron Phase:
Intron Coordinates:
15583339 - 15606403
Intron Length:
23065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTTTTGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
71.7
0.49
0.9
67.3
33.9
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
50.2
0.09
2.2
77.22
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032012
15581382 - 15606845
25464